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symdesign

Model, design, and analyze proteins without explicit considerations for applying local and global symmetry.

Modules exported by this package:

  • flags: Setup program inputs to perform a job
  • metrics: Perform calculations on a protein pose
  • protocols: Implement a defined set of instructions for a protein pose
  • resources: Common methods and variable to connect job instructions to protocol implementation during job runtime
  • sequence: Handle biological sequences as python objects
  • structure: Handle biological structures as python objects
  • tools: Helper scripts, not quite yet a protocols worthy module, perhaps only accomplishes a sinlge task like file manipulation
  • utils: Miscellaneous functions, methods, and tools for all modules
  • visualization: Miscellaneous PyMol visualization helper functions and plotting config.